efmlrs.postprocessing.decompressions package¶
Submodules¶
efmlrs.postprocessing.decompressions.deadend module¶
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efmlrs.postprocessing.decompressions.deadend.decompressions(compressed, mapping)[source]¶ Decompresses the part of the current compressed efm that has been compressed during deadend compression by inserting zeros at the index of deadend metabolites.
Parameters: - compressed (list) – list containing efm for decompression
- mapping – list containing decompression information for deadend decompressions
Returns: compressed: list containing current efm with decompressed deadend part
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efmlrs.postprocessing.decompressions.deadend.parse_info(file)[source]¶ Reads decompression information from infofile and builds decompression list for deadend compressions.
Parameters: file – infofile automatically created during compressions, containing all information for decompressions Returns: cmp_info: list containing decompression information for deadend compressions